Publications
2024 Link to heading
Preprints Link to heading
LipiDetective-a deep learning model for the identification of molecular lipid species in tandem mass spectra
Vivian Würf, Nikolai Köhler, Florian Molnar, Lisa Hahnefeld, Robert Gurke, Michael Witting, Josch Konstantin Pauling
bioRxiv, 2024
Citation
Journal Articles Link to heading
Exclusive Enteral Nutrition Initiates Individual Protective Microbiome Changes to Induce Remission in Pediatric Crohn’s Disease
Deborah Haecker, Kolja Siebert, Byron J Smith, Nikolai Köhler, Aritra Mahapatra, Helena Heimes, Amira Metwaly, Hannes Hölz, Quirin Manz, Federica De Zen, Jeannine Heetmeyer, Katharina Socas, Giang Le Thi, Chen Meng, Karin Kleigrewe, Josch K Pauling, Klaus Neuhaus, Markus List, Katherine S Pollard, Tobias Schwerd, Dirk Haller
Cell Host & Microbe, 2024
Citation
2023 Link to heading
Preprints Link to heading
Identification and Integration of Key-Metabolic Reactions from Untargeted Metabolomics Data
Nikolai Köhler, Vivian Würf, Tim Daniel Rose and Josch Konstantin Pauling
bioRxiv, 2023
Citation
Felix Hoheneder\(^\dagger\), Christina E Steidele$^{\dagger}$, Maxim Messerer, Klaus Mayer, Nikolai Köhler, Christine Wurmser, Michael Heß, Michael Gigl, Corinna Dawid, Remco Stam, Ralph Hückelhoven
bioRxiv, 2023
Citation
ATF6 activation alters colonic lipid metabolism causing tumor-associated microbial adaptation
Olivia I. Coleman\(^\dagger\), Adam Sorbie\(^\dagger\), Sandra Bierwith, Janine Kövilein, Miriam von Stern, Nikolai Köhler, Jakob Wirbel, Christina Schmidt, Tim Kacprowski, Andreas Dunkel, Josh K. Pauling Johannes Plagge, Diego Mediel-Cuadra, Sophia Wagner, Tingying Peng, Thomas Metzler, Clemens Schafmayer, Sebastian Hinz, Christian Röder, Christoph Röcken, Bärbel Stecher, Philip Rosenstiel, Katja Steiger, Moritz Jesinghaus, Gerhard Liebisch, Josef Ecker, Georg Zeller, Klaus-Peter Janssen, Dirk Haller
bioRxiv, 2023
Citation
Journal Articles Link to heading
Lipid network and moiety analysis for revealing enzymatic dysregulation and mechanistic alterations from lipidomics data
Tim Daniel Rose\(^\dagger\), Nikolai Köhler\(^\dagger\), Lisa Falk, Lucie Klischat, Olga Lazareva and Josch Konstantin Pauling
Briefings in Bioinformatics, 2023
Citation
Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions
Tito Damiani, Stefano Bonciarelli, Gerhard G Thallinger, Nikolai Köhler, Christoph A Krettler, Arif K Salihoğlu, Ansgar Korf, Josch K Pauling, Tomáš Pluskal, Zhixu Ni, Laura Goracci
Analytical Chemistry, 2023
Citation
2022 Link to heading
Journal Articles Link to heading
MoSBi: Automated signature mining for molecular stratification and subtyping
Tim Daniel Rose, Thibault Bechtler, Octavia-Andreea Ciora, Kim Anh Lilian Le, Florian Molnar, Nikolai Köhler, Jan Baumbach, Richard Roettger, Josch Konstantin Pauling
Proceedings of the National Academy of Science U.S.A. (PNAS), 2022
Citation
Kupffer cells are protective in alcoholic steatosis.
Nikolai Köhler\(^\dagger\), Marcus Höring\(^\dagger\), Beate Czepukojc\(^\dagger\), Tim Daniel Rose\(^\dagger\), Christa Buechler, Tarek Kröhler, Johannes Haybaeck, Gerhard Liebisch, Josch K. Pauling, Sonja M. Kessler, Alexandra K. Kiemer
Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, 2022
Citation
2021 Link to heading
Journal Articles Link to heading
Investigating Global Lipidome Alterations with the Lipid Network Explorer.
Nikolai Köhler\(^\dagger\), Tim Daniel Rose\(^\dagger\), Lisa Falk and Josch Konstantin Pauling
Metabolites, 2021
Citation
Liver Lipids of Patients with Hepatitis B and C and Associated Hepatocellular Carcinoma.
Haberl EM, Weiss TS, Peschel G, Weigand K, Köhler N, Pauling JK, Wenzel JJ, Höring M, Krautbauer S, Liebisch G, Buechler C
International Journal of Molecular Sciences, 2021
Citation
Susceptibility to diet induced obesity at thermoneutral conditions is independent of UCP1
Sebastian Dieckmann, Akim Strohmeyer, Monja Willershäuser, Stefanie Maurer, Wolfgang Wurst, Susan Marschall, Martin Hrabe de Angelis, Ralf Kühn, Anna Worthmann, Marceline M Fuh, Joerg Heeren, Nikolai Köhler, Josch K. Pauling, Martin Klingenspor
American Journal of Physiology-Endocrinology and Metabolism, 2021
Citation
2019 Link to heading
Journal Articles Link to heading
Pyrrolizidine Alkaloids: Biosynthesis, Biological Activities and Occurrence in Crop Plants
Sebastian Schramm, Nikolai Köhler, Wilfried Rozhon
Molecules, 2019
Citation
\(^{\dagger}\) these authors contributed equally